Visualizes the coverage depth of a complete plastid genome as well as the equality of its inverted repeat regions in relation to the circular, quadripartite genome structure and the ___location of individual genes. For more information, please see Gruenstaeudl and Jenke (2020) <doi:10.1186/s12859-020-3475-0>.
| Version: |
1.1.5 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
Biostrings (≥ 2.48.0), dplyr, GenomicAlignments (≥ 1.18.1), GenomicRanges, IRanges, logger, read.gb (≥ 2.2), RCircos (≥
1.2.0), grDevices, stats, utils, tidyr, pwalign, R6 |
| Suggests: |
testthat (≥ 3.0.0), rentrez |
| Published: |
2026-04-18 |
| DOI: |
10.32614/CRAN.package.PACVr |
| Author: |
Michael Gruenstaeudl
 [aut, cre],
Gregory Smith [ctb],
Nils Jenke [ctb] |
| Maintainer: |
Michael Gruenstaeudl <m_gruenstaeudl at fhsu.edu> |
| BugReports: |
https://github.com/michaelgruenstaeudl/PACVr/issues |
| License: |
BSD 3-clause License + file LICENSE |
| URL: |
https://github.com/michaelgruenstaeudl/PACVr |
| NeedsCompilation: |
no |
| Citation: |
PACVr citation info |
| CRAN checks: |
PACVr results |